Building on odawa
(from windows-server-2022-amd64-ocaml-5.3)
2025-01-16 19:47.16 ---> using "1d6ffeb5a52124df73b2e951323e99615c52ca4f9bdf0f65039be6146fabdaab" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "ln -f /usr/bin/opam-dev.exe /usr/bin/opam.exe"))
2025-01-16 19:47.16 ---> using "75bf3fbea1cbc65a9803f40104651d67c546cddf5606f6a4af6db8fca92eb5c0" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q fa60a1c9467beffc47d1748db9da7e933389ef8d"))
2025-01-16 19:47.16 ---> using "a95350463b4d8b8cecd3d19621c83d246178471f34d479391d6b46c004ecd8d2" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))
User configuration:
Updating ~\.bash_profile.
[NOTE] Make sure that ~\.bash_profile is well sourced in your ~/.bashrc.
Added 9 lines after line 1 in ~\.bash_profile.
2025-01-16 19:47.16 ---> using "17fb56c6e3ec72cd7ce21154cdca7b0304a6d009e83eb38c0e9a708e5f04c4a6" from cache
/: (run (cache (opam-archives (target "c:\\Users\\opam\\AppData\\Local\\opam\\download-cache")))
(network host)
(shell "opam switch create --repositories=default '5.3' '5.3.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.3.0"} | "ocaml-system" {= "5.3.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed arch-x86_64.1
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed host-arch-x86_64.1
-> installed host-system-mingw.1
-> retrieved flexdll.0.43 (cached)
-> retrieved ocaml-config.3 (cached)
-> installed flexdll.0.43
-> installed ocaml-options-vanilla.1
-> retrieved mingw-w64-shims.0.2.0 (cached)
-> installed conf-mingw-w64-gcc-x86_64.1
-> installed ocaml-env-mingw64.1
-> installed system-mingw.1
-> installed mingw-w64-shims.0.2.0
-> retrieved ocaml-compiler.5.3.0 (https://github.com/ocaml/ocaml/releases/download/5.3.0/ocaml-5.3.0.tar.gz)
-> installed ocaml-compiler.5.3.0
-> installed ocaml-base-compiler.5.3.0
-> installed ocaml-config.3
-> installed ocaml.5.3.0
-> installed base-domains.base
-> installed base-effects.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.3)
2025-01-16 19:47.16 ---> using "c399a41f12441caf534d6b480e348af3b7ac66dba41196a2baf6de57486e8a36" from cache
/: (run (network host)
(shell "opam update --depexts"))
2025-01-16 19:47.16 ---> using "3f0dad7ff4433bab4d8eb2e737c8beb229211e4a5777141c4f5a1d5e6a74a51a" from cache
/: (run (cache (opam-archives (target "c:\\Users\\opam\\AppData\\Local\\opam\\download-cache")))
(network host)
(shell "\
\nopam remove -y \"phylogenetics.0.3.0\"\
\nopam install -vy \"phylogenetics.0.3.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"phylogenetics.0.3.0\" | grep -q '\"windows-server-2022-amd64-ocaml-5.3\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
Nothing to do.
[NOTE] phylogenetics.0.3.0 is not installed.
The following actions will be performed:
=== recompile 1 package
- recompile mingw-w64-shims 0.2.0 [uses conf-mingw-w64-gcc-i686]
=== install 121 packages
- install angstrom 0.16.1 [required by angstrom-unix, biotk]
- install angstrom-unix 0.16.1 [required by phylogenetics]
- install base v0.17.1 [required by core, ppx_csv_conv]
- install base_bigstring v0.17.0 [required by core]
- install base_quickcheck v0.17.0 [required by core]
- install bigstringaf 0.10.0 [required by angstrom]
- install bin_prot v0.17.0 [required by core]
- install binning 0.0.0 [required by phylogenetics]
- install biotk 0.3 [required by phylogenetics]
- install camlzip 1.13 [required by biotk]
- install capitalization v0.17.0 [required by ppx_string_conv]
- install cmdliner 1.3.0 [required by fmt, crunch, uucp]
- install conf-blas 1 [required by lacaml]
- install conf-gsl 2 [required by gsl]
- install conf-lapack 1 [required by lacaml]
- install conf-mingw-w64-gcc-i686 1 [required by conf-mingw-w64-zlib-i686]
- install conf-mingw-w64-zlib-i686 1 [required by conf-zlib]
- install conf-mingw-w64-zlib-x86_64 1 [required by conf-zlib]
- install conf-pkg-config 3 [required by gsl]
- install conf-zlib 1 [required by camlzip, zlib]
- install core v0.17.1 [required by phylogenetics]
- install core_kernel v0.17.0 [required by core_unix]
- install core_unix v0.17.0 [required by biotk]
- install cppo 1.8.0 [required by ppx_deriving]
- install crunch 3.3.1 [required by biotk]
- install csexp 1.5.2 [required by dune-configurator]
- install csvfields v0.17.0 [required by ppx_csv_conv]
- install dune 3.17.1 [required by phylogenetics]
- install dune-configurator 3.17.1 [required by lacaml]
- install expect_test_helpers_core v0.17.0 [required by core_unix]
- install fieldslib v0.17.0 [required by core]
- install fmt 0.9.0 [required by biotk]
- install gel v0.17.0 [required by ppx_diff]
- install gg 1.0.0 [required by vg]
- install gsl 1.25.1 [required by phylogenetics]
- install int_repr v0.17.0 [required by base_bigstring, core_kernel]
- install jane-street-headers v0.17.0 [required by core, core_unix]
- install jst-config v0.17.0 [required by core, core_unix]
- install lacaml 11.1.1 [required by phylogenetics]
- install menhir 20240715 [required by phylogenetics]
- install menhirCST 20240715 [required by menhir]
- install menhirLib 20240715 [required by menhir]
- install menhirSdk 20240715 [required by menhir]
- install num 1.5-1 [required by csvfields]
- install ocaml-compiler-libs v0.17.0 [required by ppxlib]
- install ocaml-syntax-shims 1.0.0 [required by angstrom]
- install ocaml_intrinsics_kernel v0.17.1 [required by base]
- install ocamlbuild 0.15.0 [required by vg, otfm, fmt, etc.]
- install ocamlfind 1.9.5 [required by vg, ppx_deriving, fmt, etc.]
- install otfm 0.4.0 [required by biotk]
- install parsexp v0.17.0 [required by sexplib]
- install phylogenetics 0.3.0
- install ppx_assert v0.17.0 [required by core]
- install ppx_base v0.17.0 [required by core]
- install ppx_bench v0.17.0 [required by ppx_jane]
- install ppx_bin_prot v0.17.0 [required by ppx_jane]
- install ppx_cold v0.17.0 [required by ppx_base]
- install ppx_compare v0.17.0 [required by ppx_diff]
- install ppx_conv_func v0.17.0 [required by ppx_csv_conv]
- install ppx_csv_conv v0.17.0 [required by biotk]
- install ppx_custom_printf v0.17.0 [required by ppx_jane]
- install ppx_derivers 1.2.1 [required by ppx_deriving]
- install ppx_deriving 6.0.3 [required by phylogenetics]
- install ppx_diff v0.17.0 [required by core]
- install ppx_disable_unused_warnings v0.17.0 [required by ppx_jane]
- install ppx_enumerate v0.17.0 [required by ppx_diff]
- install ppx_expect v0.17.2 [required by ppx_jane]
- install ppx_fields_conv v0.17.0 [required by ppx_csv_conv]
- install ppx_fixed_literal v0.17.0 [required by ppx_jane]
- install ppx_globalize v0.17.0 [required by ppx_base]
- install ppx_hash v0.17.0 [required by core]
- install ppx_here v0.17.0 [required by ppx_jane]
- install ppx_ignore_instrumentation v0.17.0 [required by ppx_jane]
- install ppx_inline_test v0.17.0 [required by core]
- install ppx_jane v0.17.0 [required by core, core_unix]
- install ppx_let v0.17.0 [required by ppx_jane]
- install ppx_log v0.17.0 [required by ppx_jane]
- install ppx_module_timer v0.17.0 [required by ppx_jane]
- install ppx_optcomp v0.17.0 [required by core, core_unix]
- install ppx_optional v0.17.0 [required by ppx_jane]
- install ppx_pipebang v0.17.0 [required by ppx_jane]
- install ppx_sexp_conv v0.17.0 [required by core]
- install ppx_sexp_message v0.17.0 [required by core]
- install ppx_sexp_value v0.17.0 [required by ppx_jane]
- install ppx_stable v0.17.0 [required by ppx_jane]
- install ppx_stable_witness v0.17.0 [required by ppx_jane]
- install ppx_string v0.17.0 [required by ppx_jane]
- install ppx_string_conv v0.17.0 [required by ppx_jane]
- install ppx_tydi v0.17.0 [required by ppx_jane]
- install ppx_typerep_conv v0.17.0 [required by ppx_jane]
- install ppx_variants_conv v0.17.0 [required by ppx_jane]
- install ppxlib 0.34.0 [required by ppx_csv_conv, ppx_deriving]
- install ppxlib_jane v0.17.2 [required by ppx_diff]
- install printbox 0.12 [required by phylogenetics]
- install printbox-text 0.12 [required by phylogenetics]
- install ptime 1.2.0 [required by crunch]
- install re 1.12.0 [required by tyxml]
- install result 1.5 [required by biotk]
- install rresult 0.7.0 [required by biotk]
- install seq base [required by yojson]
- install sexp_pretty v0.17.0 [required by expect_test_helpers_core]
- install sexplib v0.17.0 [required by core, core_unix]
- install sexplib0 v0.17.0 [required by base]
- install spawn v0.17.0 [required by core_unix]
- install splittable_random v0.17.0 [required by core]
- install stdio v0.17.0 [required by core]
- install stdlib-shims 0.3.0 [required by ppxlib]
- install stringext 1.6.0 [required by uri]
- install time_now v0.17.0 [required by core]
- install timezone v0.17.0 [required by core_unix]
- install topkg 1.0.7 [required by vg, otfm, fmt, etc.]
- install typerep v0.17.1 [required by core]
- install tyxml 4.6.0 [required by biotk]
- install uopt v0.17.0 [required by core_unix]
- install uri 4.4.0 [required by biotk]
- install uucp 16.0.0 [required by printbox-text]
- install uutf 1.0.3 [required by printbox-text]
- install variantslib v0.17.0 [required by core]
- install vg 0.9.5 [required by biotk]
- install yojson 2.2.2 [required by phylogenetics]
- install zlib 0.8 [required by biotk]
The following system packages will first need to be installed:
mingw64-i686-gcc-core mingw64-i686-zlib mingw64-x86_64-zlib
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe to install them (may need root/sudo access)
2. Display the recommended C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe "--root" "C:\\cygwin64" "--quiet-mode" "unattended" "--no-shortcuts" "--no-startmenu" "--no-desktop" "--no-admin" "--no-version-check" "--no-write-registry" "--packages" "mingw64-i686-gcc-core,mingw64-i686-zlib,mingw64-x86_64-zlib"
- Starting cygwin install, version 2.932
- User has backup/restore rights
- User has symlink creation right
- Current Directory: C:\Windows\system32
- root: C:\cygwin64 system
- Changing gid to Administrators
- Selected local directory: C:\Windows\system32
- net: Preconfig
- site: https://cygwin.mirror.constant.com/
- solving: 3 tasks, update: no, use test packages: no
- solving: 8 tasks, update: no, use test packages: no
- Augmented Transaction List:
- 0 install mingw64-i686-binutils 2.43.1-1
- 1 install mingw64-i686-windows-default-manifest 6.4-1
- 2 install mingw64-i686-winpthreads 12.0.0-1
- 3 install mingw64-i686-zlib 1.3.1-1
- 4 install mingw64-x86_64-zlib 1.3.1-1
- 5 install mingw64-i686-headers 12.0.0-1
- 6 install mingw64-i686-runtime 12.0.0-1
- 7 install mingw64-i686-gcc-core 12.4.0-1
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-binutils/mingw64-i686-binutils-2.43.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-windows-default-manifest/mingw64-i686-windows-default-manifest-6.4-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-winpthreads/mingw64-i686-winpthreads-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-zlib/mingw64-i686-zlib-1.3.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-x86_64-zlib/mingw64-x86_64-zlib-1.3.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-headers/mingw64-i686-headers-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-runtime/mingw64-i686-runtime-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-gcc/mingw64-i686-gcc-core/mingw64-i686-gcc-core-12.4.0-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-binutils/mingw64-i686-binutils-2.43.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-windows-default-manifest/mingw64-i686-windows-default-manifest-6.4-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-winpthreads/mingw64-i686-winpthreads-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-zlib/mingw64-i686-zlib-1.3.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-x86_64-zlib/mingw64-x86_64-zlib-1.3.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-headers/mingw64-i686-headers-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-runtime/mingw64-i686-runtime-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-gcc/mingw64-i686-gcc-core/mingw64-i686-gcc-core-12.4.0-1.tar.zst
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/0p_000_autorebase.dash"
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/0p_update-info-dir.dash"
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/zp_man-db-update-index.dash"
- Ending cygwin install
- NOTE: you should run 'diskperf -y' to enable the disk statistics
- NOTE: you should run 'diskperf -y' to enable the disk statistics
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/361: [angstrom.0.16.1, angstrom-unix.0.16.1: extract]
Processing 2/361: [angstrom.0.16.1, angstrom-unix.0.16.1: extract] [base.v0.17.1: extract]
Processing 3/361: [angstrom.0.16.1, angstrom-unix.0.16.1: extract] [base.v0.17.1: extract] [base_bigstring.v0.17.0: extract]
-> retrieved angstrom.0.16.1, angstrom-unix.0.16.1 (cached)
Processing 3/361: [base.v0.17.1: extract] [base_bigstring.v0.17.0: extract]
Processing 4/361: [base.v0.17.1: extract] [base_bigstring.v0.17.0: extract] [base_quickcheck.v0.17.0: extract]
-> retrieved base.v0.17.1 (cached)
Processing 4/361: [base_bigstring.v0.17.0: extract] [base_quickcheck.v0.17.0: extract]
Processing 5/361: [base_bigstring.v0.17.0: extract] [base_quickcheck.v0.17.0: extract] [bigstringaf.0.10.0: extract]
-> retrieved base_bigstring.v0.17.0 (cached)
Processing 5/361: [base_quickcheck.v0.17.0: extract] [bigstringaf.0.10.0: extract]
Processing 6/361: [base_quickcheck.v0.17.0: extract] [bigstringaf.0.10.0: extract] [bin_prot.v0.17.0: extract]
-> retrieved base_quickcheck.v0.17.0 (cached)
Processing 6/361: [bigstringaf.0.10.0: extract] [bin_prot.v0.17.0: extract]
Processing 7/361: [bigstringaf.0.10.0: extract] [bin_prot.v0.17.0: extract] [binning.0.0.0: http]
-> retrieved bigstringaf.0.10.0 (cached)
Processing 7/361: [bin_prot.v0.17.0: extract] [binning.0.0.0: http]
Processing 8/361: [bin_prot.v0.17.0: extract] [binning.0.0.0: http] [biotk.0.3: http]
-> retrieved bin_prot.v0.17.0 (cached)
Processing 8/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 9/361: [binning.0.0.0: http] [biotk.0.3: http] [camlzip.1.13: extract]
-> retrieved camlzip.1.13 (cached)
Processing 9/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 10/361: [binning.0.0.0: http] [biotk.0.3: http] [capitalization.v0.17.0: extract]
-> retrieved capitalization.v0.17.0 (cached)
Processing 10/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 11/361: [binning.0.0.0: http] [biotk.0.3: http] [cmdliner.1.3.0: extract]
-> retrieved cmdliner.1.3.0 (cached)
Processing 11/361: [binning.0.0.0: http] [biotk.0.3: http]
-> retrieved conf-blas.1 (cached)
Processing 12/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 13/361: [binning.0.0.0: http] [biotk.0.3: http]
-> retrieved conf-lapack.1 (cached)
Processing 14/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 15/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 16/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 17/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 18/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 19/361: [binning.0.0.0: http] [biotk.0.3: http]
Processing 20/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract]
Processing 21/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract] [cmdliner: make all]
Processing 22/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh]
Processing 23/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh]
Processing 24/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc]
Processing 25/361: [binning.0.0.0: http] [biotk.0.3: http] [core.v0.17.1: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved core.v0.17.1 (cached)
Processing 25/361: [binning.0.0.0: http] [biotk.0.3: http] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 26/361: [binning.0.0.0: http] [biotk.0.3: http] [core_kernel.v0.17.0: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 26/361: [binning.0.0.0: extract] [biotk.0.3: http] [core_kernel.v0.17.0: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 26/361: [binning.0.0.0: extract] [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved binning.0.0.0 (https://github.com/pveber/binning/releases/download/v0.0.0/binning-v0.0.0.tbz)
Processing 26/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 27/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-blas: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1/test-win.sh (CWD=C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-blas.1)
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find
: No such file or directory
[ERROR] The compilation of conf-blas.1 failed at "C:\\Users\\opam\\AppData\\Local\\opam\\5.3\\.opam-switch\\build\\conf-blas.1/test-win.sh".
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find -lblas: No such file or directory
- collect2: error: ld returned 1 exit status
Processing 27/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 28/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-lapack: C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1/test-win.sh (CWD=C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-lapack.1)
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find
: No such file or directory
[ERROR] The compilation of conf-lapack.1 failed at "C:\\Users\\opam\\AppData\\Local\\opam\\5.3\\.opam-switch\\build\\conf-lapack.1/test-win.sh".
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find -llapack: No such file or directory
- collect2: error: ld returned 1 exit status
Processing 28/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 29/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\cygwin64\bin\i686-w64-mingw32-gcc.exe "--version" (CWD=C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-mingw-w64-gcc-i686.1)
- i686-w64-mingw32-gcc (GCC) 12.4.0
- Copyright (C) 2022 Free Software Foundation, Inc.
- This is free software; see the source for copying conditions. There is NO
- warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-
-> compiled conf-mingw-w64-gcc-i686.1
Processing 29/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-pkg-config: pkgconf]
-> installed conf-mingw-w64-gcc-i686.1
Processing 30/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all] [conf-pkg-config: pkgconf]
+ C:\cygwin64\bin\pkgconf.exe "--version" (CWD=C:\Users\opam\AppData\Local\opam\5.3\.opam-switch\build\conf-pkg-config.3)
- 2.3.0
-> compiled conf-pkg-config.3
Processing 30/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all]
-> installed conf-pkg-config.3
Processing 31/361: [biotk.0.3: extract] [core_kernel.v0.17.0: extract] [core_unix.v0.17.0: extract] [cmdliner: make all]
-> retrieved core_kernel.v0.17.0 (cached)
-> retrieved core_unix.v0.17.0 (cached)
#=== ERROR while compiling conf-gsl.2 =========================================#
"pkg-config": command not found.
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions were aborted
| - recompile mingw-w64-shims 0.2.0
| - fetch core_kernel v0.17.0
| - fetch core_unix v0.17.0
| - fetch cppo 1.8.0
| - fetch crunch 3.3.1
| - fetch csexp 1.5.2
| - fetch csvfields v0.17.0
| - fetch dune.3.17.1, dune-configurator.3.17.1
| - fetch expect_test_helpers_core v0.17.0
| - fetch fieldslib v0.17.0
| - fetch fmt 0.9.0
| - fetch gel v0.17.0
| - fetch gg 1.0.0
| - fetch gsl 1.25.1
| - fetch int_repr v0.17.0
| - fetch jane-street-headers v0.17.0
| - fetch jst-config v0.17.0
| - fetch lacaml 11.1.1
| - fetch menhir.20240715, menhirCST.20240715, menhirLib.20240715, menhirSdk.20240715
| - fetch mingw-w64-shims 0.2.0
| - fetch num 1.5-1
| - fetch ocaml-compiler-libs v0.17.0
| - fetch ocaml-syntax-shims 1.0.0
| - fetch ocaml_intrinsics_kernel v0.17.1
| - fetch ocamlbuild 0.15.0
| - fetch ocamlfind 1.9.5
| - fetch otfm 0.4.0
| - fetch parsexp v0.17.0
| - fetch phylogenetics 0.3.0
| - fetch ppx_assert v0.17.0
| - fetch ppx_base v0.17.0
| - fetch ppx_bench v0.17.0
| - fetch ppx_bin_prot v0.17.0
| - fetch ppx_cold v0.17.0
| - fetch ppx_compare v0.17.0
| - fetch ppx_conv_func v0.17.0
| - fetch ppx_csv_conv v0.17.0
| - fetch ppx_custom_printf v0.17.0
| - fetch ppx_derivers 1.2.1
| - fetch ppx_deriving 6.0.3
| - fetch ppx_diff v0.17.0
| - fetch ppx_disable_unused_warnings v0.17.0
| - fetch ppx_enumerate v0.17.0
| - fetch ppx_expect v0.17.2
| - fetch ppx_fields_conv v0.17.0
| - fetch ppx_fixed_literal v0.17.0
| - fetch ppx_globalize v0.17.0
| - fetch ppx_hash v0.17.0
| - fetch ppx_here v0.17.0
| - fetch ppx_ignore_instrumentation v0.17.0
| - fetch ppx_inline_test v0.17.0
| - fetch ppx_jane v0.17.0
| - fetch ppx_let v0.17.0
| - fetch ppx_log v0.17.0
| - fetch ppx_module_timer v0.17.0
| - fetch ppx_optcomp v0.17.0
| - fetch ppx_optional v0.17.0
| - fetch ppx_pipebang v0.17.0
| - fetch ppx_sexp_conv v0.17.0
| - fetch ppx_sexp_message v0.17.0
| - fetch ppx_sexp_value v0.17.0
| - fetch ppx_stable v0.17.0
| - fetch ppx_stable_witness v0.17.0
| - fetch ppx_string v0.17.0
| - fetch ppx_string_conv v0.17.0
| - fetch ppx_tydi v0.17.0
| - fetch ppx_typerep_conv v0.17.0
| - fetch ppx_variants_conv v0.17.0
| - fetch ppxlib 0.34.0
| - fetch ppxlib_jane v0.17.2
| - fetch printbox.0.12, printbox-text.0.12
| - fetch ptime 1.2.0
| - fetch re 1.12.0
| - fetch result 1.5
| - fetch rresult 0.7.0
| - fetch seq base
| - fetch sexp_pretty v0.17.0
| - fetch sexplib v0.17.0
| - fetch sexplib0 v0.17.0
| - fetch spawn v0.17.0
| - fetch splittable_random v0.17.0
| - fetch stdio v0.17.0
| - fetch stdlib-shims 0.3.0
| - fetch stringext 1.6.0
| - fetch time_now v0.17.0
| - fetch timezone v0.17.0
| - fetch topkg 1.0.7
| - fetch typerep v0.17.1
| - fetch tyxml 4.6.0
| - fetch uopt v0.17.0
| - fetch uri 4.4.0
| - fetch uucp 16.0.0
| - fetch uutf 1.0.3
| - fetch variantslib v0.17.0
| - fetch vg 0.9.5
| - fetch yojson 2.2.2
| - fetch zlib 0.8
| - install angstrom 0.16.1
| - install angstrom-unix 0.16.1
| - install base v0.17.1
| - install base_bigstring v0.17.0
| - install base_quickcheck v0.17.0
| - install bigstringaf 0.10.0
| - install bin_prot v0.17.0
| - install binning 0.0.0
| - install camlzip 1.13
| - install capitalization v0.17.0
| - install conf-mingw-w64-zlib-i686 1
| - install conf-mingw-w64-zlib-x86_64 1
| - install conf-zlib 1
| - install core v0.17.1
| - install core_kernel v0.17.0
| - install core_unix v0.17.0
| - install cppo 1.8.0
| - install crunch 3.3.1
| - install csexp 1.5.2
| - install csvfields v0.17.0
| - install dune 3.17.1
| - install dune-configurator 3.17.1
| - install expect_test_helpers_core v0.17.0
| - install fieldslib v0.17.0
| - install fmt 0.9.0
| - install gel v0.17.0
| - install gg 1.0.0
| - install gsl 1.25.1
| - install int_repr v0.17.0
| - install jane-street-headers v0.17.0
| - install jst-config v0.17.0
| - install lacaml 11.1.1
| - install menhir 20240715
| - install menhirCST 20240715
| - install menhirLib 20240715
| - install menhirSdk 20240715
| - install num 1.5-1
| - install ocaml-compiler-libs v0.17.0
| - install ocaml-syntax-shims 1.0.0
| - install ocaml_intrinsics_kernel v0.17.1
| - install ocamlbuild 0.15.0
| - install ocamlfind 1.9.5
| - install otfm 0.4.0
| - install parsexp v0.17.0
| - install phylogenetics 0.3.0
| - install ppx_assert v0.17.0
| - install ppx_base v0.17.0
| - install ppx_bench v0.17.0
| - install ppx_bin_prot v0.17.0
| - install ppx_cold v0.17.0
| - install ppx_compare v0.17.0
| - install ppx_conv_func v0.17.0
| - install ppx_csv_conv v0.17.0
| - install ppx_custom_printf v0.17.0
| - install ppx_derivers 1.2.1
| - install ppx_deriving 6.0.3
| - install ppx_diff v0.17.0
| - install ppx_disable_unused_warnings v0.17.0
| - install ppx_enumerate v0.17.0
| - install ppx_expect v0.17.2
| - install ppx_fields_conv v0.17.0
| - install ppx_fixed_literal v0.17.0
| - install ppx_globalize v0.17.0
| - install ppx_hash v0.17.0
| - install ppx_here v0.17.0
| - install ppx_ignore_instrumentation v0.17.0
| - install ppx_inline_test v0.17.0
| - install ppx_jane v0.17.0
| - install ppx_let v0.17.0
| - install ppx_log v0.17.0
| - install ppx_module_timer v0.17.0
| - install ppx_optcomp v0.17.0
| - install ppx_optional v0.17.0
| - install ppx_pipebang v0.17.0
| - install ppx_sexp_conv v0.17.0
| - install ppx_sexp_message v0.17.0
| - install ppx_sexp_value v0.17.0
| - install ppx_stable v0.17.0
| - install ppx_stable_witness v0.17.0
| - install ppx_string v0.17.0
| - install ppx_string_conv v0.17.0
| - install ppx_tydi v0.17.0
| - install ppx_typerep_conv v0.17.0
| - install ppx_variants_conv v0.17.0
| - install ppxlib 0.34.0
| - install ppxlib_jane v0.17.2
| - install printbox 0.12
| - install printbox-text 0.12
| - install ptime 1.2.0
| - install re 1.12.0
| - install result 1.5
| - install rresult 0.7.0
| - install seq base
| - install sexp_pretty v0.17.0
| - install sexplib v0.17.0
| - install sexplib0 v0.17.0
| - install spawn v0.17.0
| - install splittable_random v0.17.0
| - install stdio v0.17.0
| - install stdlib-shims 0.3.0
| - install stringext 1.6.0
| - install time_now v0.17.0
| - install timezone v0.17.0
| - install topkg 1.0.7
| - install typerep v0.17.1
| - install tyxml 4.6.0
| - install uopt v0.17.0
| - install uri 4.4.0
| - install uucp 16.0.0
| - install uutf 1.0.3
| - install variantslib v0.17.0
| - install vg 0.9.5
| - install yojson 2.2.2
| - install zlib 0.8
+-
+- The following actions failed
| - fetch biotk 0.3
| - build cmdliner 1.3.0
| - build conf-gsl 2
+-
+- The following changes have been performed (the rest was aborted)
| - install conf-blas 1
| - install conf-lapack 1
| - install conf-mingw-w64-gcc-i686 1
| - install conf-pkg-config 3
+-
# To update the current shell environment, run: eval $(opam env)
The former state can be restored with:
C:\cygwin64\bin\opam.exe switch import "C:\\Users\\opam\\AppData\\Local\\opam\\5.3\\.opam-switch\\backup\\state-20250116194731.export"
'C:\cygwin64\bin\opam.exe install -vy phylogenetics.0.3.0' failed.
"
opam remove -y "phylogenetics.0.3.0"
opam install -vy "phylogenetics.0.3.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "phylogenetics.0.3.0" | grep -q '"windows-server-2022-amd64-ocaml-5.3"'; then
echo "This package failed and has been disabled for CI using the 'x-ci-accept-failures' field."
exit 69
fi
fi
exit $res
" failed with exit status 31
Failed: Build failed
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