OCamllabs icon Home|Differences with the last checks|Previous runs


Building on odawa

(from windows-server-2022-amd64-ocaml-4.14.2)
2024-12-19 04:31.39 ---> using "b1ae2ad36af625524288c188f7e099c501706c4119a38e11e1b5610819652cec" from cache

/: (user (uid 1000) (gid 1000))

/: (env OPAMPRECISETRACKING 1)

/: (env OPAMUTF8 never)

/: (env OPAMEXTERNALSOLVER builtin-0install)

/: (env OPAMCRITERIA +removed)

/: (env CI true)

/: (env OPAM_HEALTH_CHECK_CI true)

/: (run (shell "ln -f /usr/bin/opam-dev.exe /usr/bin/opam.exe"))
2024-12-19 04:31.39 ---> using "4b57a7007c87218b9b3ddcf81f74c22338c638c8bcdfdaa01c2afa888290f021" from cache

/: (run (network host)
        (shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q f195fd3ffc8fd9778d038cba15efed18c3094402"))
2024-12-19 04:31.39 ---> using "012ddf9a4de9f40c98ca18a617d95c3c69e6c0a50e2837b13846facd384290b9" from cache

/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))

User configuration:
  Updating ~\.bash_profile.
[NOTE] Make sure that ~\.bash_profile is well sourced in your ~/.bashrc.

  Added 9 lines after line 1 in ~\.bash_profile.
2024-12-19 04:31.39 ---> using "260603a43dcce5dc1f94dfc48e37989b5eaea7d965587fc79c050395e9501eac" from cache

/: (run (cache (opam-archives (target "c:\\Users\\opam\\AppData\\Local\\opam\\download-cache")))
        (network host)
        (shell "opam switch create --repositories=default 'default' 'ocaml-base-compiler.4.14.2'"))

<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.14.2"}]

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed arch-x86_64.1
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed host-arch-x86_64.1
-> installed host-system-mingw.1
-> retrieved flexdll.0.43  (cached)
-> retrieved ocaml-config.3  (cached)
-> installed flexdll.0.43
-> installed ocaml-options-vanilla.1
-> retrieved mingw-w64-shims.0.2.0  (cached)
-> installed conf-mingw-w64-gcc-x86_64.1
-> installed ocaml-env-mingw64.1
-> installed system-mingw.1
-> retrieved ocaml-base-compiler.4.14.2  (cached)
-> installed mingw-w64-shims.0.2.0
-> installed ocaml-base-compiler.4.14.2
-> installed ocaml-config.3
-> installed ocaml.4.14.2
Done.
# To update the current shell environment, run: eval $(opam env --switch=default)
2024-12-19 04:31.39 ---> using "5ce1f3048d5c3363616529505128ebc1f9594f8f4dd0e1814ea2bdc8e96a069f" from cache

/: (run (network host)
        (shell "opam update --depexts"))
2024-12-19 04:31.39 ---> using "bc1a527dee8e5afb6e5e487eca9ef6afed9088c50bda2d206c48af535cb570d6" from cache

/: (run (cache (opam-archives (target "c:\\Users\\opam\\AppData\\Local\\opam\\download-cache")))
        (network host)
        (shell  "\
               \nopam remove -y \"phylogenetics.0.1.0\"\
               \nopam install -vy \"phylogenetics.0.1.0\"\
               \nres=$?\
               \nif [ $res = 31 ]; then\
               \n    if opam show -f x-ci-accept-failures: \"phylogenetics.0.1.0\" | grep -q '\"windows-server-2022-amd64-ocaml-4.14.2\"'; then\
               \n        echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
               \n        exit 69\
               \n    fi\
               \nfi\
               \n\
               \n\
               \nexit $res\
               \n"))
Nothing to do.
[NOTE] phylogenetics.0.1.0 is not installed.

The following actions will be performed:
=== recompile 1 package
  - recompile mingw-w64-shims            0.2.0    [uses conf-mingw-w64-gcc-i686]
=== install 95 packages
  - install   angstrom                   0.16.1   [required by angstrom-unix]
  - install   angstrom-unix              0.16.1   [required by phylogenetics]
  - install   base                       v0.14.3  [required by core_kernel]
  - install   base-bytes                 base     [required by lacaml, printbox]
  - install   base64                     3.5.1    [required by biocaml]
  - install   base_bigstring             v0.14.0  [required by core_kernel]
  - install   base_quickcheck            v0.14.1  [required by core_kernel]
  - install   bigstringaf                0.10.0   [required by angstrom]
  - install   bin_prot                   v0.14.1  [required by core_kernel]
  - install   biocaml                    0.11.1   [required by phylogenetics]
  - install   camlp-streams              5.0.1    [required by cfstream]
  - install   camlzip                    1.13     [required by biocaml]
  - install   cfstream                   1.3.2    [required by biocaml]
  - install   conf-blas                  1        [required by lacaml]
  - install   conf-gsl                   2        [required by gsl]
  - install   conf-lapack                1        [required by lacaml]
  - install   conf-m4                    1        [required by cfstream]
  - install   conf-mingw-w64-gcc-i686    1        [required by conf-mingw-w64-zlib-i686]
  - install   conf-mingw-w64-zlib-i686   1        [required by conf-zlib]
  - install   conf-mingw-w64-zlib-x86_64 1        [required by conf-zlib]
  - install   conf-pkg-config            3        [required by gsl]
  - install   conf-zlib                  1        [required by camlzip]
  - install   core                       v0.14.1  [required by phylogenetics]
  - install   core_kernel                v0.14.2  [required by biocaml]
  - install   cppo                       1.7.0    [required by ppx_deriving]
  - install   csexp                      1.5.2    [required by dune-configurator]
  - install   dune                       3.16.1   [required by phylogenetics]
  - install   dune-configurator          3.16.1   [required by gsl, lacaml]
  - install   fieldslib                  v0.14.0  [required by core_kernel]
  - install   gsl                        1.25.0   [required by phylogenetics]
  - install   jane-street-headers        v0.14.0  [required by core_kernel]
  - install   jst-config                 v0.14.1  [required by core]
  - install   lacaml                     11.0.10  [required by phylogenetics]
  - install   menhir                     20240715 [required by phylogenetics]
  - install   menhirCST                  20240715 [required by menhir]
  - install   menhirLib                  20240715 [required by menhir]
  - install   menhirSdk                  20240715 [required by menhir]
  - install   num                        1.5-1    [required by sexplib]
  - install   ocaml-compiler-libs        v0.12.4  [required by ppxlib]
  - install   ocaml-syntax-shims         1.0.0    [required by angstrom]
  - install   ocamlbuild                 0.15.0   [required by rresult, xmlm]
  - install   ocamlfind                  1.9.5    [required by ppx_deriving]
  - install   octavius                   1.2.2    [required by ppx_js_style]
  - install   parsexp                    v0.14.2  [required by sexplib]
  - install   phylogenetics              0.1.0
  - install   ppx_assert                 v0.14.0  [required by core_kernel]
  - install   ppx_base                   v0.14.0  [required by core_kernel]
  - install   ppx_bench                  v0.14.1  [required by ppx_jane]
  - install   ppx_bin_prot               v0.14.0  [required by ppx_jane]
  - install   ppx_cold                   v0.14.0  [required by ppx_base]
  - install   ppx_compare                v0.14.0  [required by biocaml]
  - install   ppx_custom_printf          v0.14.1  [required by ppx_jane]
  - install   ppx_derivers               1.2.1    [required by ppx_deriving]
  - install   ppx_deriving               5.2.1    [required by phylogenetics]
  - install   ppx_enumerate              v0.14.0  [required by ppx_base]
  - install   ppx_expect                 v0.14.2  [required by ppx_jane]
  - install   ppx_fields_conv            v0.14.2  [required by ppx_jane]
  - install   ppx_fixed_literal          v0.14.0  [required by ppx_jane]
  - install   ppx_hash                   v0.14.0  [required by core_kernel]
  - install   ppx_here                   v0.14.0  [required by ppx_jane]
  - install   ppx_inline_test            v0.14.1  [required by core_kernel]
  - install   ppx_jane                   v0.14.0  [required by core]
  - install   ppx_js_style               v0.14.1  [required by ppx_base]
  - install   ppx_let                    v0.14.0  [required by ppx_jane]
  - install   ppx_module_timer           v0.14.0  [required by ppx_jane]
  - install   ppx_optcomp                v0.14.3  [required by core_kernel]
  - install   ppx_optional               v0.14.0  [required by ppx_jane]
  - install   ppx_pipebang               v0.14.0  [required by ppx_jane]
  - install   ppx_sexp_conv              v0.14.3  [required by biocaml]
  - install   ppx_sexp_message           v0.14.1  [required by core_kernel]
  - install   ppx_sexp_value             v0.14.0  [required by ppx_jane]
  - install   ppx_stable                 v0.14.1  [required by ppx_jane]
  - install   ppx_string                 v0.14.1  [required by ppx_jane]
  - install   ppx_typerep_conv           v0.14.2  [required by ppx_jane]
  - install   ppx_variants_conv          v0.14.2  [required by ppx_jane]
  - install   ppxlib                     0.25.1   [required by ppx_deriving]
  - install   printbox                   0.5      [required by phylogenetics]
  - install   re                         1.12.0   [required by biocaml]
  - install   result                     1.5      [required by ppx_deriving]
  - install   rresult                    0.7.0    [required by biocaml]
  - install   seq                        base     [required by re]
  - install   sexplib                    v0.14.0  [required by biocaml]
  - install   sexplib0                   v0.14.0  [required by base, sexplib]
  - install   spawn                      v0.17.0  [required by core]
  - install   splittable_random          v0.14.0  [required by core_kernel]
  - install   stdio                      v0.14.0  [required by core_kernel]
  - install   stdlib-shims               0.3.0    [required by ppxlib]
  - install   stringext                  1.6.0    [required by uri]
  - install   time_now                   v0.14.0  [required by core_kernel]
  - install   timezone                   v0.14.0  [required by core]
  - install   topkg                      1.0.7    [required by rresult, xmlm]
  - install   typerep                    v0.14.0  [required by core_kernel]
  - install   uri                        4.4.0    [required by biocaml]
  - install   variantslib                v0.14.0  [required by core_kernel]
  - install   xmlm                       1.4.0    [required by biocaml]

The following system packages will first need to be installed:
    m4 mingw64-i686-gcc-core mingw64-i686-zlib mingw64-x86_64-zlib

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>

opam believes some required external dependencies are missing. opam can:
> 1. Run C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe to install them (may need root/sudo access)
  2. Display the recommended C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe command and wait while you run it manually (e.g. in another terminal)
  3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
  4. Abort the installation

[1/2/3/4] 1

+ C:\Users\opam\AppData\Local\opam\.cygwin\setup-x86_64.exe "--root" "C:\\cygwin64" "--quiet-mode" "unattended" "--no-shortcuts" "--no-startmenu" "--no-desktop" "--no-admin" "--no-version-check" "--no-write-registry" "--packages" "m4,mingw64-i686-gcc-core,mingw64-i686-zlib,mingw64-x86_64-zlib"
- Starting cygwin install, version 2.932
- User has backup/restore rights
- User has symlink creation right
- Current Directory: C:\Windows\system32
- root: C:\cygwin64 system
- Changing gid to Administrators
- Selected local directory: C:\Windows\system32
- net: Preconfig
- site: https://cygwin.mirror.constant.com/
- solving: 4 tasks, update: no, use test packages: no
- solving: 9 tasks, update: no, use test packages: no
- Augmented Transaction List:
-    0 install m4                                    1.4.19-1 
-    1 install mingw64-i686-binutils                 2.43.1-1 
-    2 install mingw64-i686-windows-default-manifest 6.4-1    
-    3 install mingw64-i686-winpthreads              12.0.0-1 
-    4 install mingw64-i686-zlib                     1.3.1-1  
-    5 install mingw64-x86_64-zlib                   1.3.1-1  
-    6 install mingw64-i686-headers                  12.0.0-1 
-    7 install mingw64-i686-runtime                  12.0.0-1 
-    8 install mingw64-i686-gcc-core                 12.4.0-1 
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/m4/m4-1.4.19-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-binutils/mingw64-i686-binutils-2.43.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-windows-default-manifest/mingw64-i686-windows-default-manifest-6.4-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-winpthreads/mingw64-i686-winpthreads-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-zlib/mingw64-i686-zlib-1.3.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-x86_64-zlib/mingw64-x86_64-zlib-1.3.1-1.tar.zst
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-headers/mingw64-i686-headers-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-runtime/mingw64-i686-runtime-12.0.0-1.tar.xz
- Downloaded C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-gcc/mingw64-i686-gcc-core/mingw64-i686-gcc-core-12.4.0-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/m4/m4-1.4.19-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-binutils/mingw64-i686-binutils-2.43.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-windows-default-manifest/mingw64-i686-windows-default-manifest-6.4-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-winpthreads/mingw64-i686-winpthreads-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-zlib/mingw64-i686-zlib-1.3.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-x86_64-zlib/mingw64-x86_64-zlib-1.3.1-1.tar.zst
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-headers/mingw64-i686-headers-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/noarch/release/mingw64-i686-runtime/mingw64-i686-runtime-12.0.0-1.tar.xz
- Extracting from file://C:\Windows\system32/https%3a%2f%2fcygwin.mirror.constant.com%2f/x86_64/release/mingw64-i686-gcc/mingw64-i686-gcc-core/mingw64-i686-gcc-core-12.4.0-1.tar.zst
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/0p_000_autorebase.dash"
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/0p_update-info-dir.dash"
- running: C:\cygwin64\bin\dash.exe "/etc/postinstall/zp_man-db-update-index.dash"
- Ending cygwin install
- NOTE: you should run 'diskperf -y' to enable the disk statistics
- NOTE: you should run 'diskperf -y' to enable the disk statistics

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/284: [angstrom.0.16.1, angstrom-unix.0.16.1: extract]
Processing  2/284: [angstrom.0.16.1, angstrom-unix.0.16.1: extract] [base.v0.14.3: extract]
Processing  3/284: [angstrom.0.16.1, angstrom-unix.0.16.1: extract] [base.v0.14.3: extract]
Processing  4/284: [angstrom.0.16.1, angstrom-unix.0.16.1: extract] [base.v0.14.3: extract] [base64.3.5.1: extract]
-> retrieved angstrom.0.16.1, angstrom-unix.0.16.1  (cached)
Processing  4/284: [base.v0.14.3: extract] [base64.3.5.1: extract]
Processing  5/284: [base.v0.14.3: extract] [base64.3.5.1: extract] [base_bigstring.v0.14.0: extract]
-> retrieved base.v0.14.3  (cached)
Processing  5/284: [base64.3.5.1: extract] [base_bigstring.v0.14.0: extract]
Processing  6/284: [base64.3.5.1: extract] [base_bigstring.v0.14.0: extract] [base_quickcheck.v0.14.1: extract]
-> retrieved base64.3.5.1  (cached)
Processing  6/284: [base_bigstring.v0.14.0: extract] [base_quickcheck.v0.14.1: extract]
Processing  7/284: [base_bigstring.v0.14.0: extract] [base_quickcheck.v0.14.1: extract] [bigstringaf.0.10.0: extract]
-> retrieved base_bigstring.v0.14.0  (cached)
Processing  7/284: [base_quickcheck.v0.14.1: extract] [bigstringaf.0.10.0: extract]
Processing  8/284: [base_quickcheck.v0.14.1: extract] [bigstringaf.0.10.0: extract] [bin_prot.v0.14.1: extract]
-> retrieved base_quickcheck.v0.14.1  (cached)
Processing  8/284: [bigstringaf.0.10.0: extract] [bin_prot.v0.14.1: extract]
Processing  9/284: [bigstringaf.0.10.0: extract] [bin_prot.v0.14.1: extract] [biocaml.0.11.1: extract]
-> retrieved bigstringaf.0.10.0  (cached)
Processing  9/284: [bin_prot.v0.14.1: extract] [biocaml.0.11.1: extract]
Processing 10/284: [bin_prot.v0.14.1: extract] [biocaml.0.11.1: extract] [camlp-streams.5.0.1: extract]
-> retrieved bin_prot.v0.14.1  (cached)
Processing 10/284: [biocaml.0.11.1: extract] [camlp-streams.5.0.1: extract]
Processing 11/284: [biocaml.0.11.1: extract] [camlp-streams.5.0.1: extract] [camlzip.1.13: extract]
-> retrieved biocaml.0.11.1  (cached)
Processing 11/284: [camlp-streams.5.0.1: extract] [camlzip.1.13: extract]
Processing 12/284: [camlp-streams.5.0.1: extract] [camlzip.1.13: extract] [cfstream.1.3.2: extract]
-> retrieved camlp-streams.5.0.1  (cached)
Processing 12/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
-> retrieved conf-blas.1  (cached)
Processing 13/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 14/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
-> retrieved conf-lapack.1  (cached)
Processing 15/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 16/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 17/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 18/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 19/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 20/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 21/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract]
Processing 22/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract]
Processing 23/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh]
Processing 24/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh]
Processing 25/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4]
Processing 26/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc]
Processing 27/284: [camlzip.1.13: extract] [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved camlzip.1.13  (cached)
Processing 27/284: [cfstream.1.3.2: extract] [core.v0.14.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 28/284: [cfstream.1.3.2: extract] [core.v0.14.1: extract] [core_kernel.v0.14.2: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved cfstream.1.3.2  (cached)
Processing 28/284: [core.v0.14.1: extract] [core_kernel.v0.14.2: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 29/284: [core.v0.14.1: extract] [core_kernel.v0.14.2: extract] [cppo.1.7.0: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved core.v0.14.1  (cached)
Processing 29/284: [core_kernel.v0.14.2: extract] [cppo.1.7.0: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 30/284: [core_kernel.v0.14.2: extract] [cppo.1.7.0: extract] [csexp.1.5.2: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved core_kernel.v0.14.2  (cached)
Processing 30/284: [cppo.1.7.0: extract] [csexp.1.5.2: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 31/284: [cppo.1.7.0: extract] [csexp.1.5.2: extract] [dune.3.16.1, dune-configurator.3.16.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved cppo.1.7.0  (cached)
Processing 31/284: [csexp.1.5.2: extract] [dune.3.16.1, dune-configurator.3.16.1: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 32/284: [csexp.1.5.2: extract] [dune.3.16.1, dune-configurator.3.16.1: extract] [fieldslib.v0.14.0: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved csexp.1.5.2  (cached)
Processing 32/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [fieldslib.v0.14.0: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 33/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [fieldslib.v0.14.0: extract] [gsl.1.25.0: http] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> retrieved fieldslib.v0.14.0  (cached)
Processing 33/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
Processing 34/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-blas: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1/test-win.sh  (CWD=C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-blas.1)
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find 
: No such file or directory
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find -lblas: No such file or directory
- collect2: error: ld returned 1 exit status
Processing 34/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
[ERROR] The compilation of conf-blas.1 failed at "C:\\Users\\opam\\AppData\\Local\\opam\\default\\.opam-switch\\build\\conf-blas.1/test-win.sh".
Processing 35/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-lapack: C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1/test-win.sh  (CWD=C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-lapack.1)
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find 
: No such file or directory
- /usr/lib/gcc/x86_64-w64-mingw32/12/../../../../x86_64-w64-mingw32/bin/ld: cannot find -llapack: No such file or directory
- collect2: error: ld returned 1 exit status
Processing 35/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
[ERROR] The compilation of conf-lapack.1 failed at "C:\\Users\\opam\\AppData\\Local\\opam\\default\\.opam-switch\\build\\conf-lapack.1/test-win.sh".
Processing 36/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-m4: sh echo | m4] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\cygwin64\bin\sh.exe "-exc" "echo | m4" (CWD=C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-m4.1)
- + echo
- + m4
- 
-> compiled  conf-m4.1
Processing 36/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
-> installed conf-m4.1
Processing 37/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-mingw-w64-gcc-i686: i686-w64-mingw32-gcc] [conf-pkg-config: pkgconf]
+ C:\cygwin64\bin\i686-w64-mingw32-gcc.exe "--version" (CWD=C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-mingw-w64-gcc-i686.1)
- i686-w64-mingw32-gcc (GCC) 12.4.0
- Copyright (C) 2022 Free Software Foundation, Inc.
- This is free software; see the source for copying conditions.  There is NO
- warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
- 
-> compiled  conf-mingw-w64-gcc-i686.1
Processing 37/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-pkg-config: pkgconf]
-> installed conf-mingw-w64-gcc-i686.1
Processing 38/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jane-street-headers.v0.14.0: extract] [conf-pkg-config: pkgconf]
-> retrieved jane-street-headers.v0.14.0  (cached)
Processing 38/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [conf-pkg-config: pkgconf]
Processing 39/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jst-config.v0.14.1: extract] [conf-pkg-config: pkgconf]
+ C:\cygwin64\bin\pkgconf.exe "--version" (CWD=C:\Users\opam\AppData\Local\opam\default\.opam-switch\build\conf-pkg-config.3)
- 2.3.0
-> compiled  conf-pkg-config.3
Processing 39/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jst-config.v0.14.1: extract]
-> installed conf-pkg-config.3
Processing 40/284: [dune.3.16.1, dune-configurator.3.16.1: extract] [gsl.1.25.0: http] [jst-config.v0.14.1: extract]
-> retrieved jst-config.v0.14.1  (cached)

#=== ERROR while compiling conf-gsl.2 =========================================#
"pkg-config": command not found.


<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions were aborted
| - recompile mingw-w64-shims                                                             0.2.0
| - fetch     jst-config                                                                  v0.14.1
| - fetch     lacaml                                                                      11.0.10
| - fetch     menhir.20240715, menhirCST.20240715, menhirLib.20240715, menhirSdk.20240715 
| - fetch     mingw-w64-shims                                                             0.2.0
| - fetch     num                                                                         1.5-1
| - fetch     ocaml-compiler-libs                                                         v0.12.4
| - fetch     ocaml-syntax-shims                                                          1.0.0
| - fetch     ocamlbuild                                                                  0.15.0
| - fetch     ocamlfind                                                                   1.9.5
| - fetch     octavius                                                                    1.2.2
| - fetch     parsexp                                                                     v0.14.2
| - fetch     phylogenetics                                                               0.1.0
| - fetch     ppx_assert                                                                  v0.14.0
| - fetch     ppx_base                                                                    v0.14.0
| - fetch     ppx_bench                                                                   v0.14.1
| - fetch     ppx_bin_prot                                                                v0.14.0
| - fetch     ppx_cold                                                                    v0.14.0
| - fetch     ppx_compare                                                                 v0.14.0
| - fetch     ppx_custom_printf                                                           v0.14.1
| - fetch     ppx_derivers                                                                1.2.1
| - fetch     ppx_deriving                                                                5.2.1
| - fetch     ppx_enumerate                                                               v0.14.0
| - fetch     ppx_expect                                                                  v0.14.2
| - fetch     ppx_fields_conv                                                             v0.14.2
| - fetch     ppx_fixed_literal                                                           v0.14.0
| - fetch     ppx_hash                                                                    v0.14.0
| - fetch     ppx_here                                                                    v0.14.0
| - fetch     ppx_inline_test                                                             v0.14.1
| - fetch     ppx_jane                                                                    v0.14.0
| - fetch     ppx_js_style                                                                v0.14.1
| - fetch     ppx_let                                                                     v0.14.0
| - fetch     ppx_module_timer                                                            v0.14.0
| - fetch     ppx_optcomp                                                                 v0.14.3
| - fetch     ppx_optional                                                                v0.14.0
| - fetch     ppx_pipebang                                                                v0.14.0
| - fetch     ppx_sexp_conv                                                               v0.14.3
| - fetch     ppx_sexp_message                                                            v0.14.1
| - fetch     ppx_sexp_value                                                              v0.14.0
| - fetch     ppx_stable                                                                  v0.14.1
| - fetch     ppx_string                                                                  v0.14.1
| - fetch     ppx_typerep_conv                                                            v0.14.2
| - fetch     ppx_variants_conv                                                           v0.14.2
| - fetch     ppxlib                                                                      0.25.1
| - fetch     printbox                                                                    0.5
| - fetch     re                                                                          1.12.0
| - fetch     result                                                                      1.5
| - fetch     rresult                                                                     0.7.0
| - fetch     seq                                                                         base
| - fetch     sexplib                                                                     v0.14.0
| - fetch     sexplib0                                                                    v0.14.0
| - fetch     spawn                                                                       v0.17.0
| - fetch     splittable_random                                                           v0.14.0
| - fetch     stdio                                                                       v0.14.0
| - fetch     stdlib-shims                                                                0.3.0
| - fetch     stringext                                                                   1.6.0
| - fetch     time_now                                                                    v0.14.0
| - fetch     timezone                                                                    v0.14.0
| - fetch     topkg                                                                       1.0.7
| - fetch     typerep                                                                     v0.14.0
| - fetch     uri                                                                         4.4.0
| - fetch     variantslib                                                                 v0.14.0
| - fetch     xmlm                                                                        1.4.0
| - install   angstrom                                                                    0.16.1
| - install   angstrom-unix                                                               0.16.1
| - install   base                                                                        v0.14.3
| - install   base-bytes                                                                  base
| - install   base64                                                                      3.5.1
| - install   base_bigstring                                                              v0.14.0
| - install   base_quickcheck                                                             v0.14.1
| - install   bigstringaf                                                                 0.10.0
| - install   bin_prot                                                                    v0.14.1
| - install   biocaml                                                                     0.11.1
| - install   camlp-streams                                                               5.0.1
| - install   camlzip                                                                     1.13
| - install   cfstream                                                                    1.3.2
| - install   conf-mingw-w64-zlib-i686                                                    1
| - install   conf-mingw-w64-zlib-x86_64                                                  1
| - install   conf-zlib                                                                   1
| - install   core                                                                        v0.14.1
| - install   core_kernel                                                                 v0.14.2
| - install   cppo                                                                        1.7.0
| - install   csexp                                                                       1.5.2
| - install   fieldslib                                                                   v0.14.0
| - install   jane-street-headers                                                         v0.14.0
| - install   jst-config                                                                  v0.14.1
| - install   lacaml                                                                      11.0.10
| - install   menhir                                                                      20240715
| - install   menhirCST                                                                   20240715
| - install   menhirLib                                                                   20240715
| - install   menhirSdk                                                                   20240715
| - install   num                                                                         1.5-1
| - install   ocaml-compiler-libs                                                         v0.12.4
| - install   ocaml-syntax-shims                                                          1.0.0
| - install   ocamlbuild                                                                  0.15.0
| - install   ocamlfind                                                                   1.9.5
| - install   octavius                                                                    1.2.2
| - install   parsexp                                                                     v0.14.2
| - install   phylogenetics                                                               0.1.0
| - install   ppx_assert                                                                  v0.14.0
| - install   ppx_base                                                                    v0.14.0
| - install   ppx_bench                                                                   v0.14.1
| - install   ppx_bin_prot                                                                v0.14.0
| - install   ppx_cold                                                                    v0.14.0
| - install   ppx_compare                                                                 v0.14.0
| - install   ppx_custom_printf                                                           v0.14.1
| - install   ppx_derivers                                                                1.2.1
| - install   ppx_deriving                                                                5.2.1
| - install   ppx_enumerate                                                               v0.14.0
| - install   ppx_expect                                                                  v0.14.2
| - install   ppx_fields_conv                                                             v0.14.2
| - install   ppx_fixed_literal                                                           v0.14.0
| - install   ppx_hash                                                                    v0.14.0
| - install   ppx_here                                                                    v0.14.0
| - install   ppx_inline_test                                                             v0.14.1
| - install   ppx_jane                                                                    v0.14.0
| - install   ppx_js_style                                                                v0.14.1
| - install   ppx_let                                                                     v0.14.0
| - install   ppx_module_timer                                                            v0.14.0
| - install   ppx_optcomp                                                                 v0.14.3
| - install   ppx_optional                                                                v0.14.0
| - install   ppx_pipebang                                                                v0.14.0
| - install   ppx_sexp_conv                                                               v0.14.3
| - install   ppx_sexp_message                                                            v0.14.1
| - install   ppx_sexp_value                                                              v0.14.0
| - install   ppx_stable                                                                  v0.14.1
| - install   ppx_string                                                                  v0.14.1
| - install   ppx_typerep_conv                                                            v0.14.2
| - install   ppx_variants_conv                                                           v0.14.2
| - install   ppxlib                                                                      0.25.1
| - install   printbox                                                                    0.5
| - install   re                                                                          1.12.0
| - install   result                                                                      1.5
| - install   rresult                                                                     0.7.0
| - install   seq                                                                         base
| - install   sexplib                                                                     v0.14.0
| - install   sexplib0                                                                    v0.14.0
| - install   spawn                                                                       v0.17.0
| - install   splittable_random                                                           v0.14.0
| - install   stdio                                                                       v0.14.0
| - install   stdlib-shims                                                                0.3.0
| - install   stringext                                                                   1.6.0
| - install   time_now                                                                    v0.14.0
| - install   timezone                                                                    v0.14.0
| - install   topkg                                                                       1.0.7
| - install   typerep                                                                     v0.14.0
| - install   uri                                                                         4.4.0
| - install   variantslib                                                                 v0.14.0
| - install   xmlm                                                                        1.4.0
+- 
+- The following actions failed
| - fetch dune.3.16.1, dune-configurator.3.16.1 
| - fetch gsl                                   1.25.0
| - build conf-gsl                              2
+- 
+- The following changes have been performed (the rest was aborted)
| - install conf-blas               1
| - install conf-lapack             1
| - install conf-m4                 1
| - install conf-mingw-w64-gcc-i686 1
| - install conf-pkg-config         3
+- 
# To update the current shell environment, run: eval $(opam env)

The former state can be restored with:
    C:\cygwin64\bin\opam.exe switch import "C:\\Users\\opam\\AppData\\Local\\opam\\default\\.opam-switch\\backup\\state-20241219043221.export"
'C:\cygwin64\bin\opam.exe install -vy phylogenetics.0.1.0' failed.
"
opam remove -y "phylogenetics.0.1.0"
opam install -vy "phylogenetics.0.1.0"
res=$?
if [ $res = 31 ]; then
    if opam show -f x-ci-accept-failures: "phylogenetics.0.1.0" | grep -q '"windows-server-2022-amd64-ocaml-4.14.2"'; then
        echo "This package failed and has been disabled for CI using the 'x-ci-accept-failures' field."
        exit 69
    fi
fi


exit $res
" failed with exit status 31
Failed: Build failed